I have friends at both these institutes and based on what I have heard from them, I can vouch that the Integrated MTech CSE program offered by IIIT Bangalore is great. Here a few of the reasons why you should choose this institute for your int. Mtech. 

Reputation: IIIT Bangalore is among the most reputed colleges not only in Bangalore but in the whole world. 

Faculty: One of the major reasons for choosing the institute is the faculty base. You can check out the official website for the faculty profiles. Most of them have PhDs from top universities of the world like MIT, UC Barkley, IISc, IIT, etc.

Most of the faculty members also have years of experience working in the industry and they can teach you according to the current industry needs.

Research-Industry:

• If you are interested in doing research, there are many courses available through which you can publish your paper. This will help you in your research afterward.
• If you are interested to work in the industry, there are many courses offered by IIIT Bangalore which teaches about the problems and required solution in the current industry scenario. So after your course, you will be ready to join the industry. The project on which you will work at IIIT B holds weights. 

Hostel:

The hostels at IIIT B are amazing. It offers 24/7 water, power supply. There is also a stable internet connection available in the hostels. 

Placements: 

IIIT-B has had a 100% record of placement over the years. Students can complete an internship in their 10th semester in an enterprise or can complete a thesis if they are involved in science. It has a great alumni base recruited in the highest echelons of reputed MNCs. 

Extra-curricular:

IIIT B has a great coding culture. The performance of the students in various coding competitions, hackathons, and the GSoC selections are proof of that. 

If you look at the record, you will find students of this institute doing internships at various reputed institutes and leading MNCs. You can also lookup the impressive publication record of the institute online. Overall IIIT B is a great choice for doing an integrated MTech CSE degree.