Graduate programs under the auspices of the Department of Computer Science are the Master of Science in computer science, the graduate secondary teacher certification endorsement program and the graduate certificate in artificial intelligence.

Departmental faculty work closely with colleagues across the university to develop interdisciplinary and applied degrees; examples are the graduate certificate and master's degree program in bioinformatics and a master's degree in mathematics with concentration in computer science. In addition the department fosters an international student exchange through its double master's degree program with the University of Applied Sciences in Karlsruhe, Germany.